Jacob J. Peoples

PhD, Computer Science

Photo of Jacob Peoples

I am a computer scientist and researcher, currently working as a post-doc in the Medical Computing Laboratory on radiomic analysis of medical images.

You can find me on Twitter, GitHub or LinkedIn.

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See my academic CV below, or in pdf format.


Education

2016 – 2020
PhD Computing, Queen's University
  • Supervisor: Randy Ellis
  • Thesis: Composition of Transformations in Feature-Based Registration
2014 – 2016
Promoted to PhD
MSc Computing, Queen's University
  • Supervisor: Randy Ellis
2010 – 2014
GPA: 4.15/4.3
BScH Mathematical Physics, Queen's University
  • Received the undergraduate medal in mathematical physics at graduation

Publications

Journal Articles

J3
N. Horvat, J. Miranda, M. E. Homsi, J. J. Peoples, N. M. Long, A. L. Simpson, and R. K. G. Do: A primer on texture analysis in abdominal radiology. Abdominal Radiology, 2021. (doi: 10.1007/s00261-021-03359-3)
J2
K. Scott, D. Stuart, J. Peoples, G. Bisleri, and R. Ellis: Efficient Automatic 2D/3D Registration of Cardiac Ultrasound and CT Images. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 2020. (doi: 10.1080/21681163.2020.1835555)
J1
J. J. Peoples, G. Bisleri, and R. E. Ellis: Deformable multimodal registration for navigation in beating-heart cardiac surgery. International Journal of Computer Assisted Radiology and Surgery, 2019. (doi: 10.1007/s11548-019-01932-2)

Refereed Conference Papers

C2
J. J. Peoples and R. E. Ellis: Composition of Transformations in the Registration of Sets of Points or Oriented Points. In ShapeMI 2020: Shape in Medical Imaging, 2020. (doi: 10.1007/978-3-030-61056-2_1)
C1
J. Peoples and R. Ellis: A Generalizable Framework for Domain-Specific Nonrigid Registration: Application to Cardiac Ultrasound. In 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 2020. (doi: 10.1109/ISBI45749.2020.9098434)

Refereed Abstracts

A2
M. S. Hefny, J. J. Peoples, M. L. Zec, D. R. Pichora, and R. E. Ellis: Topologically consistent triangulation for computer assisted surgery planning. In CARS 2016, International Journal of Computer Assisted Surgery (Suppl 1), 2016.
A1
M. S. Hefny, J. J. Peoples, M. L. Zec, D. R. Pichora, and R. E. Ellis: Atlas-based scaphoid fixation planning. In Proceedings of the Annual Meetings of CAOS-International, 2016.

Preprints

Pr1
K. Cannon, C. Hanna, and J. Peoples: Likelihood-ratio ranking statistic for compact binary coalescence candidates with rate estimation. arXiv preprint arXiv:1504.04632, 2015.

Research Experience

2020/09 – Present
Post-doctoral Fellow, Queen's University
  • Conducting research on machine learning and radiomics applied to various clinical datasets and projects
  • Helping supervise and guide student research projects
2020/06 – 2020/08
Research Assistant, Queen's University
  • Early stage research into application of deep learning to brain tumour detection
  • Helping to design patient specific surgical guides for the spine
2016/09 – 2020/04
Graduate Researcher (PhD), Queen's University
  • Research on nonrigid point set registration toward doctoral thesis
Selected Projects
  • Point Set Registration
    • Developed novel algorithms for point set registration using state-of-the-art statistical methods
    • Implemented custom software using MATLAB, Python/TensorFlow and C++
    • Designed and conducted experiments for validation and testing of robustness
  • Cardiac Image Registration
    • Developed a novel method of aligning intraoperative ultrasound and preoperative CT cardiac images
    • Implemented custom software in MATLAB and C++ to do the registration and analysis
    • Helped supervise and oversaw the onboarding of two undergraduate researchers
2014/09 – 2016/08
Graduate Researcher (Master's), Queen's University
  • Research on 3D mesh processing and statistical shape modeling toward Master's thesis
Selected Projects
  • Preprocessing 3D Mesh Geometry
    • Developed novel meshing algorithms to prepare data for an in-house statistical shape modeling algorithm
    • Implemented custom software in MATLAB and C++ to process 3D data
  • Study of Wrist Surgery Planning
    • Oversaw clinician participants as they completed drill plans to be analyzed in the study
    • Conducted preprocessing on data with custom software and novel algorithms
2015/10 – 2016/01
Special Research Student, Nara Institute of Science and Technology
  • Research on statistical shape modeling of the liver using then state-of-the-art methods
  • Provided a seminar to hosting research group on shape modeling methods
2013/05 – 2013/08
Summer Undergraduate Researcher, Canadian Institute for Theoretical Astrophysics
  • Research and software development in Python as part of the LIGO Scientific Collaboration

Teaching Experience

2018 Winter
Teaching Fellow, Queen's University, Discrete Mathematics for Computing I (CISC102)
  • Sole instructor of mandatory first year computer science course with over 100 students
  • Responsible for lectures, office hours, and all other course materials
  • Worked with students requiring special accommodations to ensure all needs were met
  • Managed a team of teaching assistants to aid with grading and office hours
2017 Winter
Guest Lecturer, Queen's University, Continuous Coordinate Transformations (CISC881)
  • Provided 3 lectures on differential geometry (2017/01/14, 2017/01/16, 2017/03/28)
2016 Fall, 2014 Fall
Teaching Assistant, Queen's University, Discrete Mathematics for Computing I (CISC102)
  • Held office hours, graded and proctored tests, edited and suggested problems for exams
2015 Fall
Teaching Assistant, Queen's University, Logic for Computing Science (CISC204)
  • Lead group tutorial sessions, graded and proctored tests

Awards and Honours

Research Scholarships

2017/09 – 2020/08
NSERC PGS-D, CAD 21,000 per annum
2015/05 – 2016/04
NSERC Alexander G. Bell CGS-M, CAD 17,500
2016/09 – 2017/08
Queen Elizabeth II Graduate Scholarship in Science and Technology, CAD 15,000
2015/11 – 2016/01
JASSO Student Exchange Support Program for Short Term Study in Japan
2013/05 – 2013/08
NSERC Undergraduate Summer Research Award

Undergraduate Awards

All awards listed below were awarded by Queen's University
2014
Medal in Mathematical Physics, Dean's Honour List
2013
Dean's Honour List, Nellie and Ralph Jeffery Award in Mathematics
2012
Dean's Honour List with Distinction, Susan Near Prize in Mathematics, Susan Near Prize in Physics, Dora and Beatrice Helmkay Scholarship in Mathematics
2011
Dean's Honour List with Distinction, William Coombs Baker Memorial Prize, Day Prize in Physics and Mathematics, Annie Bentley Lillie Prize in First Year Calculus, Principal's Scholarship
2010
Principal's Scholarship

Conference Presentations

Talks

T3
J. J. Peoples and R. E. Ellis: Composition of Transformations in the Registration of Sets of Points or Oriented Points. Presented at ShapeMI MICCAI 2020, (Remote), 2020/10/04
T2
J. J. Peoples, G. Bisleri, and R. E. Ellis: Deformable Multi-Modal Registration for Navigation in Beating-Heart Cardiac Surgery. Presented at IPCAI 2019, Rennes, France, by J. J. Peoples, 2019/06/19 (video)
  • Chosen by audience vote after short talk given previous day
T1
J. J. Peoples, G. Bisleri, and R. E. Ellis: Deformable Multi-Modal Registration for Navigation in Beating-Heart Cardiac Surgery. Presented at IPCAI 2019, Rennes, France, by J. J. Peoples, 2019/06/18 (video)

Posters

P1
J. J. Peoples, G. Bisleri, and R. E. Ellis: Deformable Multi-Modal Registration for Navigation in Beating-Heart Cardiac Surgery. Presented at IPCAI 2019, Rennes, France, by J. J. Peoples, 2019/06/18 to 2019/06/19